Package: leidenAlg 1.1.8

Evan Biederstedt

leidenAlg: Implements the Leiden Algorithm via an R Interface

An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.

Authors:Peter Kharchenko [aut], Viktor Petukhov [aut], Yichen Wang [aut], V.A. Traag [ctb], Gábor Csárdi [ctb], Tamás Nepusz [ctb], Minh Van Nguyen [ctb], Evan Biederstedt [cre, aut]

leidenAlg_1.1.8.tar.gz
leidenAlg_1.1.8.zip(r-4.7-x86_64)leidenAlg_1.1.8.zip(r-4.6-x86_64)leidenAlg_1.1.8.zip(r-4.5-x86_64)
leidenAlg_1.1.8.tgz(r-4.6-arm64)leidenAlg_1.1.8.tgz(r-4.6-x86_64)leidenAlg_1.1.8.tgz(r-4.5-x86_64)leidenAlg_1.1.8.tgz(r-4.5-arm64)
leidenAlg_1.1.8.tar.gz(r-4.7-arm64)leidenAlg_1.1.8.tar.gz(r-4.7-x86_64)leidenAlg_1.1.8.tar.gz(r-4.6-arm64)leidenAlg_1.1.8.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
leidenAlg/json (API)

# Install 'leidenAlg' in R:
install.packages('leidenAlg', repos = c('https://kharchenkolab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kharchenkolab/leidenalg/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

7.07 score 13 stars 6 packages 64 scripts 5.3k downloads 8 exports 44 dependencies

Last updated from:665cfef3c6. Checks:11 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK239
linux-devel-x86_64OK280
source / vignettesOK299
linux-release-arm64OK245
linux-release-x86_64OK283
macos-release-arm64OK176
macos-release-x86_64FAIL206
macos-oldrel-arm64OK151
macos-oldrel-x86_64OK327
windows-devel-x86_64OK332
windows-release-x86_64OK369
windows-oldrel-x86_64OK378
wasm-releaseFAIL274

Exports:as.dendrogram.fakeCommunitiesfind_partitionfind_partition_rcppfind_partition_with_repfind_partition_with_rep_rcppleiden.communitymembership.fakeCommunitiesrleiden.community

Dependencies:BHclicpp11dplyrdqrngfarverFNNgenericsggplot2ggrepelgluegtableigraphirlbaisobandlabelinglatticelifecyclemagrittrMatrixpbmcapplypillarpkgconfigpROCR6RColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppProgressrlangRSpectraS7scalessccoresitmotibbletidyselectutf8uwotvctrsviridisLitewithr