1. conos::small_panel.preprocessed
    Small pre-processed data from Pagoda2, two samples, each dimension (1000, 100)
    rda| rds
    list
  2. leidenAlg::exampleGraph
    Conos graph
    rda| rds
    igraph
  3. numbat::acen_hg19
    centromere regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  4. numbat::acen_hg38
    centromere regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 3
  5. numbat::annot_ref
    example reference cell annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 2
  6. numbat::bulk_example
    example pseudobulk dataframe
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3935 x 83
  7. numbat::chrom_sizes_hg19
    chromosome sizes (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  8. numbat::chrom_sizes_hg38
    chromosome sizes (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 2
  9. numbat::count_mat_example
    example gene expression count matrix
    rda| rds
    dgCMatrix
  10. numbat::count_mat_ref
    example reference count matrix
    rda| rds
    dgCMatrix
  11. numbat::df_allele_example
    example allele count dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41167 x 11
  12. numbat::gaps_hg19
    genome gap regions (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|28 x 3
  13. numbat::gaps_hg38
    genome gap regions (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30 x 3
  14. numbat::gexp_roll_example
    example smoothed gene expression dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 2000
  15. numbat::gtf_hg19
    gene model (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26841 x 5
  16. numbat::gtf_hg38
    gene model (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.table|26807 x 5
  17. numbat::gtf_mm10
    gene model (mm10)
    csv| xlsx| json| ndjson| rda| rds
    data.table|30336 x 5
  18. numbat::hc_example
    example hclust tree
    rda| rds
    hclust
  19. numbat::joint_post_example
    example joint single-cell cnv posterior dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|3806 x 71
  20. numbat::mut_graph_example
    example mutation graph
    rda| rds
    igraph
  21. numbat::phylogeny_example
    example single-cell phylogeny
    rda| rds
    tbl_graph
  22. numbat::pre_likelihood_hmm
    HMM object for unit tests
    json| rda| rds
    list
  23. numbat::ref_hca
    reference expression magnitudes from HCA
    csv| json| rda| rds
    matrix|24756 x 12
  24. numbat::ref_hca_counts
    reference expression counts from HCA
    csv| json| rda| rds
    matrix|24857 x 12
  25. numbat::segs_example
    example CNV segments dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.table|27 x 30
  26. numbat::vcf_meta
    example VCF header
    json| rda| rds
    character
  27. sccore::cellAnnotations
    Conos cell annotations
    json| rda| rds
    character
  28. sccore::conosClusterList
    Conos clusters list
    rda| rds
    list
  29. sccore::conosGraph
    Conos graph
    rda| rds
    igraph
  30. sccore::umapEmbedding
    UMAP embedding
    csv| json| rda| rds
    matrix|12000 x
  31. scistreer::P_example
    Example genotype probability matrix
    csv| json| rda| rds
    matrix|1000 x 25
  32. scistreer::P_small
    Smaller example genotype probability matrix
    csv| json| rda| rds
    matrix|100 x 25
  33. scistreer::gtree_small
    Smaller example annotated tree built from P_small
    rda| rds
    tbl_graph
  34. scistreer::mut_nodes_small
    Mutation placements calculated from tree_small and P_small
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 2
  35. scistreer::tree_small
    Smaller example tree built from P_small
    rda| rds
    phylo
  36. scistreer::tree_upgma
    Example tree built using UPGMA from P_small
    rda| rds
    phylo