Package: scistreer
Title: Maximum-Likelihood Perfect Phylogeny Inference at Scale
URL: https://github.com/kharchenkolab/scistreer,
        https://kharchenkolab.github.io/scistreer/
Version: 1.2.1
Authors@R: c(person("Teng","Gao", email="tgaoteng@gmail.com", role=c("cre", "aut")), person("Evan", "Biederstedt", email="evan.biederstedt@gmail.com", role="aut"), person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = "aut"), person("Yufeng", "Wu", email = "yufeng.wu@uconn.edu", role = "aut"))
Description: Fast maximum-likelihood phylogeny inference from noisy
        single-cell data using the 'ScisTree' algorithm by Yufeng Wu
        (2019) <doi:10.1093/bioinformatics/btz676>. 'scistreer'
        provides an 'R' interface and improves speed via 'Rcpp' and
        'RcppParallel', making the method applicable to massive
        single-cell datasets (>10,000 cells).
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1.0)
biocViews:
Imports: ape, dplyr, ggplot2, ggtree, igraph, parallelDist, patchwork,
        phangorn, Rcpp, reshape2, RcppParallel, RhpcBLASctl, stringr,
        tidygraph
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
LinkingTo: Rcpp, RcppArmadillo, RcppParallel
NeedsCompilation: yes
SystemRequirements: GNU make
Author: Teng Gao [cre, aut], Evan Biederstedt [aut], Peter Kharchenko
        [aut], Yufeng Wu [aut]
Maintainer: Teng Gao <tgaoteng@gmail.com>
RoxygenNote: 7.2.2
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev
Repository: https://kharchenkolab.r-universe.dev
Date/Publication: 2026-02-04 19:26:23 UTC
RemoteUrl: https://github.com/kharchenkolab/scistreer
RemoteRef: HEAD
RemoteSha: a376bf3a1e25179c6ff36e456c4b851c27af31d9
Packaged: 2026-06-24 05:14:08 UTC; root