Package: sccore Title: Core Utilities for Single-Cell RNA-Seq Version: 1.0.7 Authors@R: c(person("Viktor","Petukhov", email="viktor.petukhov+gh@pm.me", role="aut"), person("Rasmus","Rydbirk", email="rrydbirk@bmb.sdu.dk", role="aut"), person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = "aut"), person("Evan","Biederstedt", email="evan.biederstedt@gmail.com", role=c("aut", "cre"))) Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP , collapsing vertices of each cluster in the graph, and propagating graph labels. License: GPL-3 Encoding: UTF-8 LazyData: true Imports: dplyr, ggplot2, ggrepel, graphics, grDevices, igraph, irlba, magrittr, Matrix, methods, parallel, pbmcapply, pROC, Rcpp, rlang, scales, stats, tibble, utils, uwot, withr Depends: R (>= 3.5.0) Suggests: ggrastr (>= 0.1.7), jsonlite, philentropy, rmumps, Seurat, testthat RoxygenNote: 7.3.3 LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen NeedsCompilation: yes URL: https://github.com/kharchenkolab/sccore BugReports: https://github.com/kharchenkolab/sccore/issues Author: Viktor Petukhov [aut], Rasmus Rydbirk [aut], Peter Kharchenko [aut], Evan Biederstedt [aut, cre] Maintainer: Evan Biederstedt Config/pak/sysreqs: libglpk-dev libxml2-dev Repository: https://kharchenkolab.r-universe.dev Date/Publication: 2026-04-06 13:00:08 UTC RemoteUrl: https://github.com/kharchenkolab/sccore RemoteRef: HEAD RemoteSha: 3953dfd9cc5c05a3160dc2812bb6873cc95b92f8 Packaged: 2026-06-24 05:11:30 UTC; root