To cite package ‘pagoda2’ in publications use:

Barkas N, Petukhov V, Kharchenko P, Biederstedt E (2026). pagoda2: Single Cell Analysis and Differential Expression. R package version 1.0.15, https://github.com/kharchenkolab/pagoda2.

Corresponding BibTeX entry:

  @Manual{,
    title = {pagoda2: Single Cell Analysis and Differential
      Expression},
    author = {Nikolas Barkas and Viktor Petukhov and Peter Kharchenko
      and Evan Biederstedt},
    year = {2026},
    note = {R package version 1.0.15},
    url = {https://github.com/kharchenkolab/pagoda2},
  }